Mock Version: 1.2.14
ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-IRanges.spec'], env={'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'SHELL': '/bin/bash', 'CCACHE_UMASK': '002'}uid=1000chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-19318/root'logger=<mockbuild.trace_decorator.getLog object at 0xb5e69610>user='mockbuild'printOutput=Falsetimeout=0shell=Falsegid=135)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-IRanges.spec'] with env {'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'SHELL': '/bin/bash', 'CCACHE_UMASK': '002'} and shell False
Building target platforms: armv6hl
Building for target armv6hl
Wrote: /builddir/build/SRPMS/R-IRanges-2.2.5-1bs02npfc23.src.rpm
Child return code was: 0
LEAVE do --> 

Mock Version: 1.2.14
ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-IRanges.spec'], shell=Falseuid=1000logger=<mockbuild.trace_decorator.getLog object at 0xb5eba610>env={'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_DIR': '/tmp/ccache', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8'}gid=135timeout=0user='mockbuild'printOutput=FalsechrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-17508/root')
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-IRanges.spec'] with env {'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_DIR': '/tmp/ccache', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: armv6hl
Building for target armv6hl
Wrote: /builddir/build/SRPMS/R-IRanges-2.2.5-1bs02npfc23.src.rpm
Child return code was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', "/usr/bin/rpmbuild -bb --target armv6hl --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/R-IRanges.spec "], private_network=Truegid=135uid=1000printOutput=Falselogger=<mockbuild.trace_decorator.getLog object at 0xb5eba610>env={'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_DIR': '/tmp/ccache', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8'}shell=Falseuser='mockbuild'timeout=0chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-17508/root')
Executing command: ['bash', '--login', '-c', "/usr/bin/rpmbuild -bb --target armv6hl --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/R-IRanges.spec "] with env {'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_DIR': '/tmp/ccache', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: armv6hl
Building for target armv6hl
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.pFZtEH
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf IRanges
+ /usr/bin/mkdir -p IRanges
+ cd IRanges
+ /usr/bin/gzip -dc /builddir/build/SOURCES/IRanges_2.2.5.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.sEv88o
+ umask 022
+ cd /builddir/build/BUILD
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.LNihV5
+ cd IRanges
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm
++ dirname /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm
+ cd IRanges
+ rm -rf /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm
+ mkdir -p /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm/usr/lib/R/library
+ R CMD INSTALL IRanges -l /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm/usr/lib/R/library
* installing *source* package 'IRanges' ...
** libs
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c CompressedList_class.c -o CompressedList_class.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c GappedRanges_class.c -o GappedRanges_class.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c Grouping_class.c -o Grouping_class.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c IRanges_class.c -o IRanges_class.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c IRanges_constructor.c -o IRanges_constructor.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c IntervalTree.c -o IntervalTree.o
IntervalTree.c: In function '_IntegerIntervalTree_overlap_first':
IntervalTree.c:502:20: warning: variable 'nhits' set but not used [-Wunused-but-set-variable]
   int i, j, index, nhits; 
                    ^
IntervalTree.c: In function '_IntegerIntervalTree_overlap_last':
IntervalTree.c:576:20: warning: variable 'nhits' set but not used [-Wunused-but-set-variable]
   int i, j, index, nhits; 
                    ^
IntervalTree.c: In function '_IntegerIntervalTree_overlap':
IntervalTree.c:367:10: warning: 'result_inds' may be used uninitialized in this function [-Wmaybe-uninitialized]
   return result_inds;
          ^
IntervalTree.c: In function '_IntegerIntervalForest_overlap':
IntervalTree.c:402:23: warning: 'result_inds' may be used uninitialized in this function [-Wmaybe-uninitialized]
   for (m = 0, r_elt = INTEGER(result_inds); 
                       ^
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c NCList.c -o NCList.o
NCList.c: In function 'NCList_find_overlaps_in_groups':
NCList.c:1052:7: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
  SEXP ans;
       ^
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c R_init_IRanges.c -o R_init_IRanges.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c RangedData_class.c -o RangedData_class.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c Ranges_class.c -o Ranges_class.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c Ranges_comparison.c -o Ranges_comparison.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c RleViews_utils.c -o RleViews_utils.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c SimpleRangesList_class.c -o SimpleRangesList_class.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c common.c -o common.o
common.c: In function 'firstWordInFile':
common.c:1787:1: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
 fgets(wordBuf, wordBufSize, f);
 ^
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c coverage_methods.c -o coverage_methods.o
coverage_methods.c: In function 'compute_coverage_from_IRanges_holder':
coverage_methods.c:503:28: warning: 'x_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
  if (*out_ranges_are_tiles && x_end != cvg_len)
                            ^
coverage_methods.c:419:21: note: 'x_end' was declared here
      i, j, x_start, x_end, shift_elt, tmp;
                     ^
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c dlist.c -o dlist.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c errabort.c -o errabort.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c inter_range_methods.c -o inter_range_methods.o
inter_range_methods.c: In function 'reduce_ranges':
inter_range_methods.c:168:11: warning: 'gapwidth' may be used uninitialized in this function [-Wmaybe-uninitialized]
     delta += gapwidth;
           ^
inter_range_methods.c:116:31: note: 'gapwidth' was declared here
      append_or_drop, max_end, gapwidth, delta, width_inc;
                               ^
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c localmem.c -o localmem.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c memalloc.c -o memalloc.o
memalloc.c: In function 'carefulAlloc':
memalloc.c:290:14: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=]
     errAbort("Allocated too much memory - more than %ld bytes (%ld)",
              ^
memalloc.c:290:14: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t {aka unsigned int}' [-Wformat=]
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c rbTree.c -o rbTree.o
gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib/R/library/S4Vectors/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c ucsc_handlers.c -o ucsc_handlers.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o IRanges.so CompressedIRangesList_class.o CompressedList_class.o GappedRanges_class.o Grouping_class.o IRanges_class.o IRanges_constructor.o IntervalTree.o NCList.o R_init_IRanges.o RangedData_class.o Ranges_class.o Ranges_comparison.o RleViews_utils.o S4Vectors_stubs.o SimpleRangesList_class.o common.o coverage_methods.o dlist.o errabort.o inter_range_methods.o localmem.o memalloc.o rbTree.o ucsc_handlers.o -L/usr/lib/R/lib -lR
installing to /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm/usr/lib/R/library/IRanges/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'window<-' from package 'stats' in package 'IRanges'
Creating a generic function for 'rev' from package 'base' in package 'IRanges'
in method for 'coerce' with signature '"Hits","PartitioningByEnd"': no definition for class "PartitioningByEnd"
in method for 'coerce' with signature '"Hits","Partitioning"': no definition for class "Partitioning"
in method for 'coerce' with signature '"Hits","Ranges"': no definition for class "Ranges"
in method for 'coerce' with signature '"Hits","IRanges"': no definition for class "IRanges"
in method for 'coerce' with signature '"Hits","CompressedIntegerList"': no definition for class "CompressedIntegerList"
in method for 'coerce' with signature '"Hits","IntegerList"': no definition for class "IntegerList"
Creating a generic function for 'stack' from package 'utils' in package 'IRanges'
in method for '!' with signature '"CompressedList"': no definition for class "CompressedList"
in method for 'match' with signature '"CompressedList","list"': no definition for class "CompressedList"
in method for 'match' with signature '"CompressedList","vector"': no definition for class "CompressedList"
in method for 'duplicated' with signature '"CompressedList"': no definition for class "CompressedList"
in method for 'unique' with signature '"CompressedList"': no definition for class "CompressedList"
in method for 'is.na' with signature '"CompressedList"': no definition for class "CompressedList"
Creating a generic function for 'mean' from package 'base' in package 'IRanges'
Creating a generic function for 'which.max' from package 'base' in package 'IRanges'
Creating a generic function for 'which.min' from package 'base' in package 'IRanges'
Creating a generic function for 'split' from package 'base' in package 'IRanges'
Creating a generic function for 'split<-' from package 'base' in package 'IRanges'
Creating a generic function for 'drop' from package 'base' in package 'IRanges'
Creating a generic function for 'which' from package 'base' in package 'IRanges'
Creating a generic function for 'diff' from package 'base' in package 'IRanges'
Creating a generic function for 'var' from package 'stats' in package 'IRanges'
Creating a generic function for 'cov' from package 'stats' in package 'IRanges'
Creating a generic function for 'cor' from package 'stats' in package 'IRanges'
Creating a generic function for 'sd' from package 'stats' in package 'IRanges'
Creating a generic function for 'median' from package 'stats' in package 'IRanges'
Creating a generic function for 'quantile' from package 'stats' in package 'IRanges'
Creating a generic function for 'mad' from package 'stats' in package 'IRanges'
Creating a generic function for 'IQR' from package 'stats' in package 'IRanges'
Creating a generic function for 'smoothEnds' from package 'stats' in package 'IRanges'
Creating a generic function for 'runmed' from package 'stats' in package 'IRanges'
Creating a generic function for 'nchar' from package 'base' in package 'IRanges'
Creating a generic function for 'chartr' from package 'base' in package 'IRanges'
Creating a generic function for 'tolower' from package 'base' in package 'IRanges'
Creating a generic function for 'toupper' from package 'base' in package 'IRanges'
Creating a generic function for 'sub' from package 'base' in package 'IRanges'
Creating a generic function for 'gsub' from package 'base' in package 'IRanges'
** help
*** installing help indices
  converting help for package 'IRanges'
    finding HTML links ... done
    AtomicList-class                        html  
    finding level-2 HTML links ... done
    CompressedList-class                    html  
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:38: missing file link 'SimpleList'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:39: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:44: missing file link 'SimpleList'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:60: missing file link 'SimpleList'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:66: missing file link 'SimpleList'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:81: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:84: missing file link 'SimpleList'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:87: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:89: missing file link 'SimpleList'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:95: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:100: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:105: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:110: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:118: missing file link 'classNameForDisplay'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:124: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:127: missing file link 'SimpleList'
    DataFrame-utils                         html  
    DataFrameList-class                     html  
    FilterMatrix-class                      html  
    FilterRules-class                       html  
    GappedRanges-class                      html  
    Grouping-class                          html  
    Hits-class-leftovers                    html  
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Hits-class-leftovers.Rd:21: missing file link 'Hits'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Hits-class-leftovers.Rd:51: missing file link 'Hits'
    HitsList-class                          html  
    IRanges-class                           html  
    IRanges-constructor                     html  
    IRanges-internals                       html  
    IRanges-utils                           html  
    IRangesList-class                       html  
    IntervalForest-class                    html  
    IntervalTree-class                      html  
    List-class-leftovers                    html  
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/List-class-leftovers.Rd:11: missing file link 'List'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/List-class-leftovers.Rd:35: missing file link 'List'
    MaskCollection-class                    html  
    NCList-class                            html  
    RDApplyParams-class                     html  
    RangedData-class                        html  
    RangedDataList-class                    html  
    RangedSelection-class                   html  
    Ranges-class                            html  
    Ranges-comparison                       html  
    RangesList-class                        html  
    Rle-class-leftovers                     html  
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Rle-class-leftovers.Rd:25: missing file link 'Rle'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Rle-class-leftovers.Rd:94: missing file link 'Rle'
    RleViews-class                          html  
    RleViewsList-class                      html  
    Vector-class-leftovers                  html  
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Vector-class-leftovers.Rd:42: missing file link 'Vector'
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Vector-class-leftovers.Rd:188: missing file link 'Vector'
    Views-class                             html  
    ViewsList-class                         html  
    coverage-methods                        html  
    expand-methods                          html  
    extractList                             html  
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:164: missing file link 'unsplit'
    findOverlaps-methods                    html  
    inter-range-methods                     html  
    intra-range-methods                     html  
    mapCoords-methods                       html  
    multisplit                              html  
    nearest-methods                         html  
    read.Mask                               html  
    reverse-methods                         html  
    seqapply                                html  
    setops-methods                          html  
Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/setops-methods.Rd:106: missing file link 'union'
    slice-methods                           html  
    updateObject-methods                    html  
    view-summarization-methods              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IRanges)
+ test -d IRanges/src
+ cd IRanges/src
+ rm -f CompressedIRangesList_class.o CompressedList_class.o GappedRanges_class.o Grouping_class.o IRanges_class.o IRanges_constructor.o IntervalTree.o NCList.o R_init_IRanges.o RangedData_class.o Ranges_class.o Ranges_comparison.o RleViews_utils.o S4Vectors_stubs.o SimpleRangesList_class.o common.o coverage_methods.o dlist.o errabort.o inter_range_methods.o localmem.o memalloc.o rbTree.o ucsc_handlers.o IRanges.so
+ rm -rf /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm/usr/lib/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/IRanges
extracting debug info from /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm/usr/lib/R/library/IRanges/libs/IRanges.so
dwz: Too few files for multifile optimization
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
614 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.7iap4h
Processing files: R-IRanges-2.2.5-1bs02npfc23.armv6hl
Provides: R-IRanges = 2.2.5-1bs02npfc23 R-IRanges(armv6hl-32) = 2.2.5-1bs02npfc23
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libR.so libc.so.6 libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) rtld(GNU_HASH)
Processing files: R-IRanges-devel-2.2.5-1bs02npfc23.armv6hl
Provides: R-IRanges-devel = 2.2.5-1bs02npfc23 R-IRanges-devel(armv6hl-32) = 2.2.5-1bs02npfc23
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-IRanges-debuginfo-2.2.5-1bs02npfc23.armv6hl
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm
Wrote: /builddir/build/RPMS/R-IRanges-2.2.5-1bs02npfc23.armv6hl.rpm
Wrote: /builddir/build/RPMS/R-IRanges-devel-2.2.5-1bs02npfc23.armv6hl.rpm
Wrote: /builddir/build/RPMS/R-IRanges-debuginfo-2.2.5-1bs02npfc23.armv6hl.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.4REGGm
+ umask 022
+ cd /builddir/build/BUILD
+ cd IRanges
+ rm -rf /builddir/build/BUILDROOT/R-IRanges-2.2.5-1bs02npfc23.arm
+ exit 0
Child return code was: 0
LEAVE do -->