Mock Version: 1.2.14
ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-affy.spec'], chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-15749/root'logger=<mockbuild.trace_decorator.getLog object at 0xb5f14610>env={'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8'}printOutput=Falseuid=1000timeout=0user='mockbuild'gid=135shell=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-affy.spec'] with env {'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8'} and shell False
warning: bogus date in %changelog: Sun Aug 31 2009 pingou <pingou@pingoured.fr> 1.22.1-3
Building target platforms: armv6hl
Building for target armv6hl
Wrote: /builddir/build/SRPMS/R-affy-1.40.0-4bs02npfc23.src.rpm
Child return code was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', "/usr/bin/rpmbuild -bb --target armv6hl --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/R-affy.spec "], private_network=TruechrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-15749/root'logger=<mockbuild.trace_decorator.getLog object at 0xb5f14610>env={'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8'}printOutput=Falseuid=1000timeout=0user='mockbuild'gid=135shell=False)
Executing command: ['bash', '--login', '-c', "/usr/bin/rpmbuild -bb --target armv6hl --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/R-affy.spec "] with env {'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'HOME': '/builddir', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8'} and shell False
warning: bogus date in %changelog: Sun Aug 31 2009 pingou <pingou@pingoured.fr> 1.22.1-3
Building target platforms: armv6hl
Building for target armv6hl
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.8Ckktd
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf affy
+ /usr/bin/mkdir -p affy
+ cd affy
+ /usr/bin/gzip -dc /builddir/build/SOURCES/affy_1.40.0.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i '/importFrom(zlibbioc)/d' affy/NAMESPACE
+ sed -i '/importFrom(BiocInstaller, biocinstallRepos)/d' affy/NAMESPACE
+ sed -i '/import(zlibbioc)/d' affy/NAMESPACE
+ sed -i -e s/BiocInstaller,// affy/DESCRIPTION
+ sed -i -e s/zlibbioc// affy/DESCRIPTION
+ cat affy/DESCRIPTION affy/NAMESPACE
Package: affy
Version: 1.40.0
Title: Methods for Affymetrix Oligonucleotide Arrays
Author: Rafael A. Irizarry <rafa@jhu.edu>, Laurent Gautier
        <lgautier@gmail.com>, Benjamin Milo Bolstad
        <bmb@bmbolstad.com>, and Crispin Miller
        <cmiller@picr.man.ac.uk> with contributions from Magnus
        Astrand <Magnus.Astrand@astrazeneca.com>, Leslie M. Cope
        <cope@mts.jhu.edu>, Robert Gentleman, Jeff Gentry, Conrad
        Halling <challing@agilixcorp.com>, Wolfgang Huber, James
        MacDonald <jmacdon@med.umich.edu>, Benjamin I. P. Rubinstein,
        Christopher Workman <workman@cbs.dtu.dk>, John Zhang
Maintainer: Rafael A. Irizarry <rafa@jhu.edu>
Depends: R (>= 2.8.0), BiocGenerics (>= 0.1.12), Biobase (>= 2.5.5)
Imports: affyio (>= 1.13.3),  graphics, grDevices,
        methods, preprocessCore, stats, utils, 
Suggests: tkWidgets (>= 1.19.0), affydata, widgetTools
LinkingTo: preprocessCore
Description: The package contains functions for exploratory
        oligonucleotide array analysis. The dependence on tkWidgets
        only concerns few convenience functions. 'affy' is fully
        functional without it.
License: LGPL (>= 2.0)
Collate: ProgressBarText.R ppset.ttest.R ppsetApply.R expressoWidget.R
        getCDFenv.R AffyRNAdeg.R avdiff.R barplot.ProbeSet.R
        bg.Affy.chipwide.R bg.R expresso.R fit.li.wong.R
        generateExprVal.method.avgdiff.R
        generateExprVal.method.liwong.R generateExprVal.method.mas.R
        generateExprVal.method.medianpolish.R
        generateExprVal.method.playerout.R hlog.R justrma.R
        loess.normalize.R maffy.R mas5.R merge.AffyBatch.R
        normalize.constant.R normalize.contrasts.R
        normalize.invariantset.R normalize.loess.R normalize.qspline.R
        normalize.quantiles.R pairs.AffyBatch.R plot.density.R
        plotLocation.R plot.ProbeSet.R pmcorrect.mas.R AffyBatch.R
        mva.pairs.R ProbeSet.R read.affybatch.R rma.R summary.R
        tukey.biweight.R whatcdf.R xy2indices.R zzz.R
biocViews: Microarray, OneChannel, Preprocessing
LazyLoad: yes
Packaged: 2013-10-15 03:16:40 UTC; biocbuild
useDynLib("affy")
importFrom(BiocGenerics, updateObject, colnames, boxplot, image)
import(affyio)
importClassesFrom(Biobase, AnnotatedDataFrame, AssayData, eSet, MIAME,
                  Versioned, VersionedBiobase, Versions)
importClassesFrom(methods, ANY, character, environment, integer,
                  matrix, missing, numeric)
importMethodsFrom(Biobase, annotatedDataFrameFrom, annotation,
                  assayData, classVersion, "classVersion<-",
                  description, "description<-", experimentData, exprs,
                  "exprs<-", featureNames, "featureNames<-",
                  isCurrent, isVersioned,
		  notes,
                  "notes<-", pData, "pData<-", phenoData,
                  "phenoData<-", preproc, "preproc<-", protocolData,
                  "protocolData<-", rowMedians, sampleNames, "sampleNames<-",
                  se.exprs, "se.exprs<-")
importMethodsFrom(methods, initialize, show)
importFrom(Biobase, addVigs2WinMenu, assayDataElementReplace,
           assayDataNew, multiassign, read.AnnotatedDataFrame,
           read.MIAME, testBioCConnection)
importMethodsFrom(BiocGenerics, normalize)
importFrom(graphics, abline, axis, barplot, frame, hist,
           lines, matplot, mtext, pairs, par, plot, points,
           smoothScatter, text)
importFrom(grDevices, dev.interactive, gray)
importFrom(methods, as, callNextMethod, getMethod, is, new,
           slot)
importFrom(preprocessCore, normalize.quantiles,
           normalize.quantiles.robust, rma.background.correct)
importFrom(stats, approx, density, IQR, lm, loess, loess.control,
           median, medpolish, model.response, model.weights, optim,
           pnorm, predict, quantile, runif, sd, smooth.spline,
           splinefun, t.test, terms, var, wilcox.test)
importFrom(utils, available.packages, contrib.url, data, flush.console,
           install.packages, object.size)
##export everything that does not start with a .
exportPattern("^[^\\.]")
export(.setAffyOptions)
exportMethods(show, boxplot, image, exprs, featureNames, geneNames, sampleNames,
              se.exprs, updateObject)
exportClasses("AffyBatch")
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.tKRTlj
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.GHvQto
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd affy
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm
++ dirname /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm
+ cd affy
+ rm -rf /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm
+ mkdir -p /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm/usr/lib/R/library
+ R CMD INSTALL affy -l /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm/usr/lib/R/library
* installing *source* package 'affy' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/usr/include/R -DNDEBUG -DHAVE_ZLIB=1  -I/usr/local/include -I"/usr/lib/R/library/preprocessCore/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c chipbackground.c -o chipbackground.o
gcc -I/usr/include/R -DNDEBUG -DHAVE_ZLIB=1  -I/usr/local/include -I"/usr/lib/R/library/preprocessCore/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c getall_locations.c -o getall_locations.o
gcc -I/usr/include/R -DNDEBUG -DHAVE_ZLIB=1  -I/usr/local/include -I"/usr/lib/R/library/preprocessCore/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c mas5calls.c -o mas5calls.o
gcc -I/usr/include/R -DNDEBUG -DHAVE_ZLIB=1  -I/usr/local/include -I"/usr/lib/R/library/preprocessCore/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c rma2.c -o rma2.o
gcc -I/usr/include/R -DNDEBUG -DHAVE_ZLIB=1  -I/usr/local/include -I"/usr/lib/R/library/preprocessCore/include"   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp  -c rma_common.c -o rma_common.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/usr/lib/R/lib -lR
installing to /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm/usr/lib/R/library/affy/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'open' from package 'base' in package 'affy'
Creating a generic function for 'close' from package 'base' in package 'affy'
Creating a generic function for 'barplot' from package 'graphics' in package 'affy'
** help
*** installing help indices
  converting help for package 'affy'
    finding HTML links ... done
    AffyBatch-class                         html  
    finding level-2 HTML links ... done
    AffyRNAdeg                              html  
    MAplot                                  html  
    ProbeSet-class                          html  
    ProgressBarText-class                   html  
    SpikeIn                                 html  
    affy-options                            html  
    affy.scalevalue.exprSet                 html  
    barplot.ProbeSet                        html  
    bg.adjust                               html  
    bgc                                     html  
    cdfFromBioC                             html  
    cdfenv.example                          html  
    cleancdfname                            html  
    debug.affy123                           html  
    expresso                                html  
    expressoWidget                          html  
    fit.li.wong                             html  
    generateExprSet-methods                 html  
    generateExprVal-methods                 html  
    generateExprVal.method.avgdiff          html  
    generateExprVal.method.playerout        html  
    hlog                                    html  
    justrma                                 html  
    list.celfiles                           html  
    loess.normalize                         html  
    maffy.normalise                         html  
    maffy.subset                            html  
    mas5                                    html  
    mas5calls                               html  
    merge.AffyBatch                         html  
    multiloess                              html  
    mva.pairs                               html  
    normalize-methods                       html  
    normalize.constant                      html  
    normalize.contrast                      html  
    normalize.invariantset                  html  
    normalize.loess                         html  
    normalize.qspline                       html  
    normalize.quantiles                     html  
    normalize.quantiles.robust              html  
    pairs.AffyBatch                         html  
    plot.ProbeSet                           html  
    plot.density                            html  
    plotLocation                            html  
    pmcorrect                               html  
    ppsetApply                              html  
    probeMatch-methods                      html  
    probeNames-methods                      html  
    read.affybatch                          html  
    read.probematrix                        html  
    rma                                     html  
    setAffyOptions                          html  
    simplemultiLoess                        html  
    summary                                 html  
    tukey.biweight                          html  
    whatcdf                                 html  
    xy2indices                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (affy)
+ test -d affy/src
+ cd affy/src
+ rm -f chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o affy.so
+ rm -rf /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm/usr/lib/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/affy
extracting debug info from /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm/usr/lib/R/library/affy/libs/affy.so
dwz: Too few files for multifile optimization
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
82 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.MWhcUv
Processing files: R-affy-1.40.0-4bs02npfc23.armv6hl
Provides: R-affy = 1.40.0-4bs02npfc23 R-affy(armv6hl-32) = 1.40.0-4bs02npfc23
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libR.so libc.so.6 libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libz.so.1 rtld(GNU_HASH)
Processing files: R-affy-debuginfo-1.40.0-4bs02npfc23.armv6hl
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm
Wrote: /builddir/build/RPMS/R-affy-1.40.0-4bs02npfc23.armv6hl.rpm
Wrote: /builddir/build/RPMS/R-affy-debuginfo-1.40.0-4bs02npfc23.armv6hl.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.EvNvnB
+ umask 022
+ cd /builddir/build/BUILD
+ cd affy
+ rm -rf /builddir/build/BUILDROOT/R-affy-1.40.0-4bs02npfc23.arm
+ exit 0
Child return code was: 0
LEAVE do -->