Mock Version: 1.2.14 ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-affyio.spec'], shell=Falseuid=1000logger=gid=135chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-19502/root'user='mockbuild'timeout=0printOutput=Falseenv={'HOSTNAME': 'mock', 'CCACHE_DIR': '/tmp/ccache', 'CCACHE_UMASK': '002', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash'}) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-affyio.spec'] with env {'HOSTNAME': 'mock', 'CCACHE_DIR': '/tmp/ccache', 'CCACHE_UMASK': '002', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash'} and shell False Building target platforms: armv6hl Building for target armv6hl Wrote: /builddir/build/SRPMS/R-affyio-1.32.0-3bs02npfc23.src.rpm Child return code was: 0 LEAVE do --> Mock Version: 1.2.14 ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-affyio.spec'], user='mockbuild'uid=1000env={'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'CCACHE_DIR': '/tmp/ccache', 'CCACHE_UMASK': '002'}gid=135logger=chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-19318/root'timeout=0shell=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-affyio.spec'] with env {'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'CCACHE_DIR': '/tmp/ccache', 'CCACHE_UMASK': '002'} and shell False Building target platforms: armv6hl Building for target armv6hl Wrote: /builddir/build/SRPMS/R-affyio-1.32.0-3bs02npfc23.src.rpm Child return code was: 0 LEAVE do --> Mock Version: 1.2.14 ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-affyio.spec'], user='mockbuild'logger=printOutput=Falseenv={'HOME': '/builddir', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8', 'CCACHE_DIR': '/tmp/ccache'}chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-17508/root'shell=Falsetimeout=0uid=1000gid=135) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/R-affyio.spec'] with env {'HOME': '/builddir', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8', 'CCACHE_DIR': '/tmp/ccache'} and shell False Building target platforms: armv6hl Building for target armv6hl Wrote: /builddir/build/SRPMS/R-affyio-1.32.0-3bs02npfc23.src.rpm Child return code was: 0 LEAVE do --> ENTER do(['bash', '--login', '-c', "/usr/bin/rpmbuild -bb --target armv6hl --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/R-affyio.spec "], user='mockbuild'logger=printOutput=Falseprivate_network=Trueenv={'HOME': '/builddir', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8', 'CCACHE_DIR': '/tmp/ccache'}chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-17508/root'shell=Falsetimeout=0uid=1000gid=135) Executing command: ['bash', '--login', '-c', "/usr/bin/rpmbuild -bb --target armv6hl --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/R-affyio.spec "] with env {'HOME': '/builddir', 'CCACHE_UMASK': '002', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8', 'CCACHE_DIR': '/tmp/ccache'} and shell False Building target platforms: armv6hl Building for target armv6hl Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.cdGZd0 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf affyio + /usr/bin/mkdir -p affyio + cd affyio + /usr/bin/gzip -dc /builddir/build/SOURCES/affyio_1.32.0.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i '/Imports: zlibbioc/d' affyio/DESCRIPTION + sed -i '/import(zlibbioc)/d' affyio/NAMESPACE + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.K8lEwV + umask 022 + cd /builddir/build/BUILD Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.eQbjfU + cd affyio + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm ++ dirname /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm + cd affyio + rm -rf /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm + mkdir -p /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm/usr/lib/R/library + R CMD INSTALL affyio -l /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm/usr/lib/R/library * installing *source* package 'affyio' ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for main in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes checking for pthread_create in -lpthread... yes checking if we can use pthreads... yes checking if PTHREAD_STACK_MIN is defined... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c fread_functions.c -o fread_functions.o fread_functions.c: In function 'gzread_int32': fread_functions.c:414:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(int)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_uint32': fread_functions.c:439:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(unsigned int)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_int16': fread_functions.c:458:20: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(short)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_uint16': fread_functions.c:476:20: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(unsigned short)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_float32': fread_functions.c:497:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(float)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_char': fread_functions.c:513:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(char)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_uchar': fread_functions.c:529:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(unsigned char)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_double64': fread_functions.c:547:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream, destination,sizeof(double)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_be_int32': fread_functions.c:575:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(int)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_be_uint32': fread_functions.c:600:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(unsigned int)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_be_int16': fread_functions.c:620:20: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(short)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_be_uint16': fread_functions.c:636:20: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(unsigned short)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_be_float32': fread_functions.c:656:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(float)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_be_char': fread_functions.c:673:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(char)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_be_uchar': fread_functions.c:690:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream,destination,sizeof(unsigned char)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: In function 'gzread_be_double64': fread_functions.c:706:19: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] result = gzread(instream, destination,sizeof(double)*n); ^ In file included from fread_functions.h:12:0, from fread_functions.c:10: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ fread_functions.c: At top level: fread_functions.c:300:13: warning: 'swap_uint_32' defined but not used [-Wunused-function] static void swap_uint_32(unsigned int *tni4) /* 4 byte integer numbers */ ^ gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c init_package.c -o init_package.o gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_abatch.c -o read_abatch.o read_abatch.c: In function 'read_cel_file_stddev': read_abatch.c:735:10: warning: variable 'cur_mean' set but not used [-Wunused-but-set-variable] double cur_mean, cur_stddev; ^ read_abatch.c: In function 'read_cel_file_npixels': read_abatch.c:841:20: warning: variable 'cur_stddev' set but not used [-Wunused-but-set-variable] double cur_mean, cur_stddev; ^ read_abatch.c:841:10: warning: variable 'cur_mean' set but not used [-Wunused-but-set-variable] double cur_mean, cur_stddev; ^ read_abatch.c: In function 'read_gzcel_file_stddev': read_abatch.c:1630:10: warning: variable 'cur_mean' set but not used [-Wunused-but-set-variable] double cur_mean, cur_stddev; ^ read_abatch.c: In function 'read_gzcel_file_npixels': read_abatch.c:1735:20: warning: variable 'cur_stddev' set but not used [-Wunused-but-set-variable] double cur_mean, cur_stddev; ^ read_abatch.c:1735:10: warning: variable 'cur_mean' set but not used [-Wunused-but-set-variable] double cur_mean, cur_stddev; ^ read_abatch.c: In function 'gz_get_detailed_header_info': read_abatch.c:1989:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] currentFile = open_gz_cel_file(filename); ^ read_abatch.c:1991:22: warning: passing argument 1 of 'gzAdvanceToSection' from incompatible pointer type [-Wincompatible-pointer-types] gzAdvanceToSection(currentFile,"[HEADER]",buffer); ^ read_abatch.c:1439:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzAdvanceToSection(gzFile my_file,char *sectiontitle, char *buffer){ ^ read_abatch.c:1993:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"Cols",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:1998:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"Rows",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2003:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"GridCornerUL",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2009:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"GridCornerUR",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2015:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"GridCornerLR",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2021:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"GridCornerLL",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2027:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"DatHeader",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2059:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"Algorithm",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2067:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"AlgorithmParameters",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2072:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(currentFile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'gz_get_masks_outliers': read_abatch.c:2100:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] currentFile = open_gz_cel_file(filename); ^ read_abatch.c:2104:22: warning: passing argument 1 of 'gzAdvanceToSection' from incompatible pointer type [-Wincompatible-pointer-types] gzAdvanceToSection(currentFile,"[MASKS]",buffer); ^ read_abatch.c:1439:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzAdvanceToSection(gzFile my_file,char *sectiontitle, char *buffer){ ^ read_abatch.c:2105:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"NumberCells=",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2109:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"CellHeader=",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2118:34: warning: passing argument 3 of 'ReadgzFileLine' from incompatible pointer type [-Wincompatible-pointer-types] ReadgzFileLine(buffer, BUF_SIZE, currentFile); ^ read_abatch.c:1354:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void ReadgzFileLine(char *buffer, int buffersize, gzFile currentFile){ ^ read_abatch.c:2133:22: warning: passing argument 1 of 'gzAdvanceToSection' from incompatible pointer type [-Wincompatible-pointer-types] gzAdvanceToSection(currentFile,"[OUTLIERS]",buffer); ^ read_abatch.c:1439:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzAdvanceToSection(gzFile my_file,char *sectiontitle, char *buffer){ ^ read_abatch.c:2134:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"NumberCells=",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2138:20: warning: passing argument 1 of 'gzfindStartsWith' from incompatible pointer type [-Wincompatible-pointer-types] gzfindStartsWith(currentFile,"CellHeader=",buffer); ^ read_abatch.c:1416:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void gzfindStartsWith(gzFile my_file,char *starts, char *buffer){ ^ read_abatch.c:2146:34: warning: passing argument 3 of 'ReadgzFileLine' from incompatible pointer type [-Wincompatible-pointer-types] ReadgzFileLine(buffer, BUF_SIZE, currentFile); ^ read_abatch.c:1354:13: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' static void ReadgzFileLine(char *buffer, int buffersize, gzFile currentFile){ ^ read_abatch.c:2158:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(currentFile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'isgzBinaryCelFile': read_abatch.c:3141:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_abatch.c:3148:13: warning: pasgcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_bpmap.c -o read_bpmap.o sing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c:3153:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c:3159:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c:3164:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c:3169:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'gzread_binary_header': read_abatch.c:3192:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_abatch.c:3247:15: warning: passing argument 1 of 'gzread' from incompatible pointer type [-Wincompatible-pointer-types] if (!gzread(infile,this_header->header,sizeof(char)*this_header->header_len)){ ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1313:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len)); ^ read_abatch.c:3289:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'gzread_binarycel_file_intensities': read_abatch.c:3591:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->gzinfile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c:3597:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->infile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'FILE * {aka struct _IO_FILE *}' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c:3607:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->gzinfile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'gzread_binarycel_file_stddev': read_abatch.c:3644:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->gzinfile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c:3654:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->gzinfile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'gzread_binarycel_file_npixels': read_abatch.c:3692:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->infile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'FILE * {aka struct _IO_FILE *}' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c:3702:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->gzinfile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'gz_binary_apply_masks': read_abatch.c:3735:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(my_header->infile,my_header->n_cells*sizeofrecords,SEEK_CUR); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'FILE * {aka struct _IO_FILE *}' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_abatch.c:3748:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(my_header->gzinfile,my_header->n_masks*sizeof(cur_loc),SEEK_CUR); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_abatch.c:3761:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(my_header->gzinfile,my_header->n_outliers*sizeof(cur_loc),SEEK_CUR); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_abatch.c:3764:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->gzinfile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'gzbinary_get_masks_outliers': read_abatch.c:3797:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(my_header->gzinfile,my_header->n_cells*sizeofrecords,SEEK_CUR); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_abatch.c:3827:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(my_header->gzinfile); ^ In file included from fread_functions.h:12:0, from read_abatch.c:164: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_abatch.c: In function 'readfile_group': read_abatch.c:4369:9: warning: unused variable 'Current_intensity' [-Wunused-variable] SEXP Current_intensity; ^ read_abatch.c: In function 'read_probeintensities': read_abatch.c:4436:11: warning: variable 'CurintensityMatrix' set but not used [-Wunused-but-set-variable] double *CurintensityMatrix, *pmMatrix=0, *mmMatrix=0; ^ read_abatch.c: In function 'readfile_group': read_abatch.c:4378:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ read_abatch.c: In function 'checkFileCDF_group': read_abatch.c:4387:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ read_bpmap.c: In function 'ReadBPMAPHeader': read_bpmap.c:78:7: warning: unused variable 'version_number_int' [-Wunused-variable] int version_number_int; ^ gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_cdf_xda.c -o read_cdf_xda.o gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_cdffile2.c -o read_cdffile2.o read_cdffile2.c:364:12: warning: 'token_ends_with' defined but not used [-Wunused-function] static int token_ends_with(char *token, char *ends_in){ ^ gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_celfile_generic.c -o read_celfile_generic.o read_celfile_generic.c: In function 'read_genericcel_file_intensities': read_celfile_generic.c:711:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:709:10: warning: unused variable 'cur_index' [-Wunused-variable] size_t cur_index; ^ read_celfile_generic.c:708:15: warning: unused variable 'j' [-Wunused-variable] size_t i=0, j=0; ^ read_celfile_generic.c: In function 'read_genericcel_file_stddev': read_celfile_generic.c:761:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:759:10: warning: unused variable 'cur_index' [-Wunused-variable] size_t cur_index; ^ read_celfile_generic.c:758:15: warning: unused variable 'j' [-Wunused-variable] size_t i=0, j=0; ^ read_celfile_generic.c: In function 'read_genericcel_file_npixels': read_celfile_generic.c:815:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:813:10: warning: unused variable 'cur_index' [-Wunused-variable] size_t cur_index; ^ read_celfile_generic.c:812:15: warning: unused variable 'j' [-Wunused-variable] size_t i=0, j=0; ^ read_celfile_generic.c: In function 'generic_get_masks_outliers': read_celfile_generic.c:877:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:875:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_celfile_generic.c:874:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0; ^ read_celfile_generic.c: In function 'generic_apply_masks': read_celfile_generic.c:969:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:963:15: warning: unused variable 'j' [-Wunused-variable] size_t i=0, j=0; ^ read_celfile_generic.c: In function 'isgzGenericCelFile': read_celfile_generic.c:1067:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:1074:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c:1080:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c:1089:12: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c:1094:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c: In function 'gzgeneric_get_header_info': read_celfile_generic.c:1115:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:1151:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c: In function 'gzgeneric_get_detailed_header_info': read_celfile_generic.c:1175:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:1633:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c: In function 'check_gzgeneric_cel_file': read_celfile_generic.c:1661:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:1701:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c: In function 'gzread_genericcel_file_intensities': read_celfile_generic.c:1726:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:1745:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c:1715:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:1713:10: warning: unused variable 'cur_index' [-Wunused-variable] size_t cur_index; ^ read_celfile_generic.c:1712:15: warning: unused variable 'j' [-Wunused-variable] size_t i=0, j=0; ^ read_celfile_generic.c: In function 'gzread_genericcel_file_stddev': read_celfile_generic.c:1777:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:1790:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:1802:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c:1766:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:1764:10: warning: unused variable 'cur_index' [-Wunused-variable] size_t cur_index; ^ read_celfile_generic.c:1763:15: warning: unused variable 'j' [-Wunused-variable] size_t i=0, j=0; ^ read_celfile_generic.c: In function 'gzread_genericcel_file_npixels': read_celfile_generic.c:1831:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:1844:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:1848:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:1861:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c:1820:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:1818:10: warning: unused variable 'cur_index' [-Wunused-variable] size_t cur_index; ^ read_celfile_generic.c:1817:15: warning: unused variable 'j' [-Wunused-variable] size_t i=0, j=0; ^ read_celfile_generic.c: In function 'gzgeneric_get_masks_outliers': read_celfile_generic.c:1896:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:1910:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:1915:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:1920:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:1939:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:1960:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c:1885:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:1883:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_celfile_generic.c:1882:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0; ^ read_celfile_generic.c: In function 'gzgeneric_apply_masks': read_celfile_generic.c:1991:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_celfile_generic.c:2012:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:2017:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:2022:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:2038:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_celfile_generic.c:2056:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_celfile_generic.c:1977:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_celfile_generic.c:1971:15: warning: unused variable 'j' [-Wunused-variable] size_t i=0, j=0; ^ gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_clf.c -o read_clf.o read_clf.c: In function 'read_clf_header': read_clf.c:557:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ read_clf.c: At top level: read_clf.c:292:12: warning: 'token_ends_with' defined but not used [-Wunused-function] static int token_ends_with(char *token, char *ends_in){ ^ read_clf.c:389:12: warning: 'IsCommentLine' defined but not used [-Wunused-function] static int IsCommentLine(char *buffer){ ^ gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_generic.c -o read_generic.o read_generic.c: In function 'gzread_ASTRING_fw': read_generic.c:927:9: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(instream, length-destination->len, SEEK_CUR); ^ In file included from fread_functions.h:12:0, from read_generic.c:50: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_generic.c: In function 'gzread_AWSTRING_fw': read_generic.c:973:9: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(instream, length-2*destination->len, SEEK_CUR); ^ In file included from fread_functions.h:12:0, from read_generic.c:50: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_generic.c: In function 'gzRead_Generic': read_generic.c:1508:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(cur_file_name, "rb")) == NULL) ^ read_generic.c:1540:14: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from fread_functions.h:12:0, from read_generic.c:50: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_generic.c: In function 'determine_MIMETYPE': read_generic.c:458:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ read_generic.c: In function 'decode_nvt_triplet': read_generic.c:1683:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ read_generic.c: In function 'Read_Generic_R_List': read_generic.c:2028:2: warning: 'return_value' may be used uninitialized in this function [-Wmaybe-uninitialized] SET_VECTOR_ELT(VECTOR_ELT(temp_sxp2,2),i,generic_data_set_rows_R_List(&my_data_set, i)); ^ read_generic.c:1877:8: note: 'return_value' was declared here SEXP return_value; ^ read_generic.c:1793:3: warning: 'tmp_sexp' may be used uninitialized in this function [-Wmaybe-uninitialized] SET_VECTOR_ELT(return_value,0,tmp_sexp); ^ read_generic.c:1782:8: note: 'tmp_sexp' was declared here SEXP tmp_sexp, return_names; ^ gcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o read_multichannel_celfile_generic.c: In function 'multichannel_determine_number_channels': read_multichannel_celfile_generic.c:109:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:106:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:105:17: warning: unused variable 'k' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c:105:7: warning: unused variable 'i' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'multichannel_determine_channel_name': read_multichannel_celfile_generic.c:173:20: warning: unused variable 'my_data_set' [-Wunused-variable] generic_data_set my_data_set; ^ read_multichannel_celfile_generic.c:165:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:162:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:161:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c:161:7: warning: unused variable 'i' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'read_genericcel_file_intensities_multichannel': read_multichannel_celfile_generic.c:223:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:221:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:220:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'read_genericcel_file_stddev_multichannel': read_multichannel_celfile_generic.c:280:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:278:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:277:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'read_genericcel_file_npixels_multichannel': read_multichannel_celfile_generic.c:344:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:342:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:341:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'generic_get_masks_outliers_multichannel': read_multichannel_celfile_generic.c:418:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:416:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:415:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'generic_apply_masks_multichannel': read_multichannel_celfile_generic.c:522:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:516:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0; ^ read_multichannel_celfile_generic.c: In function 'isgzGenericMultiChannelCelFile': read_multichannel_celfile_generic.c:620:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_multichannel_celfile_generic.c:627:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:633:13: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:642:12: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:647:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c: In function 'gzmultichannel_determine_number_channels': read_multichannel_celfile_generic.c:677:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_multichannel_celfile_generic.c:701:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile,next_group,SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:704:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:664:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:661:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:660:17: warning: unused variable 'k' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c:660:7: warning: unused variable 'i' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'gzmultichannel_determine_channel_name': read_multichannel_celfile_generic.c:729:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_multichannel_celfile_generic.c:741:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile,next_group,SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:751:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:725:20: warning: unused variable 'my_data_set' [-Wunused-variable] generic_data_set my_data_set; ^ read_multichannel_celfile_generic.c:717:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:714:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:713:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c:713:7: warning: unused variable 'i' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'gzread_genericcel_file_intensities_multichannel': read_multichannel_celfile_generic.c:778:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_multichannel_celfile_generic.c:793:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile,next_group,SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:807:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka structgcc -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -g -O2 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv6 -mfloat-abi=hard -mfpu=vfp -c read_pgf.c -o read_pgf.o gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:766:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:764:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:763:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'gzread_genericcel_file_stddev_multichannel': read_multichannel_celfile_generic.c:834:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_multichannel_celfile_generic.c:849:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile,next_group,SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:856:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:867:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:822:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:820:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:819:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'gzread_genericcel_file_npixels_multichannel': read_multichannel_celfile_generic.c:896:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_multichannel_celfile_generic.c:912:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile,next_group,SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:919:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:923:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:936:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:884:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:882:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:881:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'gzgeneric_get_masks_outliers_multichannel': read_multichannel_celfile_generic.c:965:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_multichannel_celfile_generic.c:981:12: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile,next_group,SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:989:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:994:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:999:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:1018:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:1039:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:953:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:951:7: warning: unused variable 'cur_index' [-Wunused-variable] int cur_index; ^ read_multichannel_celfile_generic.c:950:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0, k=0; ^ read_multichannel_celfile_generic.c: In function 'gzgeneric_apply_masks_multichannel': read_multichannel_celfile_generic.c:1069:15: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] if ((infile = gzopen(filename, "rb")) == NULL) ^ read_multichannel_celfile_generic.c:1090:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:1095:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:1100:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:1116:10: warning: passing argument 1 of 'gzseek' from incompatible pointer type [-Wincompatible-pointer-types] gzseek(infile, my_data_set.file_pos_last, SEEK_SET); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1726:17: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int)); ^ read_multichannel_celfile_generic.c:1134:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] gzclose(infile); ^ In file included from read_multichannel_celfile_generic.c:43:0: /usr/include/zlib.h:1511:12: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type 'struct gzFile_s **' ZEXTERN int ZEXPORT gzclose OF((gzFile file)); ^ read_multichannel_celfile_generic.c:1055:7: warning: unused variable 'fread_err' [-Wunused-variable] int fread_err=0; ^ read_multichannel_celfile_generic.c:1049:12: warning: unused variable 'j' [-Wunused-variable] int i=0, j=0; ^ read_pgf.c: In function 'read_pgf_header': read_pgf.c:901:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ read_pgf.c: In function 'insert_level0': read_pgf.c:1167:23: warning: unused variable 'temp_ptr' [-Wunused-variable] probeset_list_node *temp_ptr; ^ read_pgf.c: In function 'pgf_count_probeset_types': read_pgf.c:1265:28: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] my_pgf->probesets->current= my_pgf->probesets->current->next; ^ read_pgf.c: At top level: read_pgf.c:363:12: warning: 'token_ends_with' defined but not used [-Wunused-function] static int token_ends_with(char *token, char *ends_in){ ^ gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o affyio.so fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -lpthread -lz -lpthread -L/usr/lib/R/lib -lR installing to /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm/usr/lib/R/library/affyio/libs ** R ** preparing package for lazy loading ** help *** installing help indices converting help for package 'affyio' finding HTML links ... done check.cdf.type html read.cdffile.list html read.celfile html read.celfile.header html read.celfile.probeintensity.matrices html read_abatch html ** building package indices ** testing if installed package can be loaded * DONE (affyio) + test -d affyio/src + cd affyio/src + rm -f fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o affyio.so + rm -rf /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm/usr/lib/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/affyio extracting debug info from /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm/usr/lib/R/library/affyio/libs/affyio.so dwz: Too few files for multifile optimization /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 1068 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.lGTBXY Processing files: R-affyio-1.32.0-3bs02npfc23.armv6hl Provides: R-affyio = 1.32.0-3bs02npfc23 R-affyio(armv6hl-32) = 1.32.0-3bs02npfc23 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libR.so libc.so.6 libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libpthread.so.0 libpthread.so.0(GLIBC_2.4) libz.so.1 rtld(GNU_HASH) Processing files: R-affyio-debuginfo-1.32.0-3bs02npfc23.armv6hl Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm Wrote: /builddir/build/RPMS/R-affyio-1.32.0-3bs02npfc23.armv6hl.rpm Wrote: /builddir/build/RPMS/R-affyio-debuginfo-1.32.0-3bs02npfc23.armv6hl.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.RJLbYF + umask 022 + cd /builddir/build/BUILD + cd affyio + rm -rf /builddir/build/BUILDROOT/R-affyio-1.32.0-3bs02npfc23.arm + exit 0 Child return code was: 0 LEAVE do -->