Mock Version: 1.2.14 ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/clipper.spec'], logger=shell=Falsegid=135user='mockbuild'uid=1000printOutput=Falsetimeout=0chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-10381/root'env={'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'CCACHE_DIR': '/tmp/ccache', 'SHELL': '/bin/bash', 'CCACHE_UMASK': '002', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8'}) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/clipper.spec'] with env {'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'CCACHE_DIR': '/tmp/ccache', 'SHELL': '/bin/bash', 'CCACHE_UMASK': '002', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: armv6hl Building for target armv6hl Wrote: /builddir/build/SRPMS/clipper-2.1-28.20140911bs02fc23.src.rpm Child return code was: 0 LEAVE do --> ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv6hl --nodeps /builddir/build/SPECS/clipper.spec '], logger=shell=Falsegid=135user='mockbuild'uid=1000private_network=TrueprintOutput=Falsetimeout=0chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-10381/root'env={'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'CCACHE_DIR': '/tmp/ccache', 'SHELL': '/bin/bash', 'CCACHE_UMASK': '002', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8'}) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv6hl --nodeps /builddir/build/SPECS/clipper.spec '] with env {'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'CCACHE_DIR': '/tmp/ccache', 'SHELL': '/bin/bash', 'CCACHE_UMASK': '002', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: armv6hl Building for target armv6hl Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.aimGsG + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf clipper-2.1.20140911 + /usr/bin/gzip -dc /builddir/build/SOURCES/clipper-2.1.20140911.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd clipper-2.1.20140911 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (clipper-pkgconfig.patch): + echo 'Patch #0 (clipper-pkgconfig.patch):' + /usr/bin/cat /builddir/build/SOURCES/clipper-pkgconfig.patch + /usr/bin/patch -p0 --fuzz=0 patching file clipper.pc.in + sed -i 's/\r//' dox/coordtypes.dox + sed -i 's/\r//' dox/develop.dox + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0csrlp + umask 022 + cd /builddir/build/BUILD + cd clipper-2.1.20140911 + CFLAGS='-O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp' + export CFLAGS + CXXFLAGS='-O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp' + export CXXFLAGS + FFLAGS='-O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in '$(find $(dirname ./configure) -name config.guess -o -name config.sub)' ++ basename ./build-aux/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build-aux/config.sub ++ basename ./build-aux/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub' + for i in '$(find $(dirname ./configure) -name config.guess -o -name config.sub)' ++ basename ./build-aux/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build-aux/config.guess ++ basename ./build-aux/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess' + '[' 1 = 1 ']' + '[' x '!=' x-specs=/usr/lib/rpm/redhat/redhat-hardened-ld ']' ++ find . -name ltmain.sh + for i in '$(find . -name ltmain.sh)' + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh + ./configure --build=armv6hl-redhat-linux-gnu --host=armv6hl-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-contrib --enable-phs --enable-cns --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-fortran --enable-shared --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for armv6hl-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for armv6hl-redhat-linux-gnu-g++... no checking for armv6hl-redhat-linux-gnu-c++... no checking for armv6hl-redhat-linux-gnu-gpp... no checking for armv6hl-redhat-linux-gnu-aCC... no checking for armv6hl-redhat-linux-gnu-CC... no checking for armv6hl-redhat-linux-gnu-cxx... no checking for armv6hl-redhat-linux-gnu-cc++... no checking for armv6hl-redhat-linux-gnu-cl.exe... no checking for armv6hl-redhat-linux-gnu-FCC... no checking for armv6hl-redhat-linux-gnu-KCC... no checking for armv6hl-redhat-linux-gnu-RCC... no checking for armv6hl-redhat-linux-gnu-xlC_r... no checking for armv6hl-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for armv6hl-redhat-linux-gnu-ar... no checking for armv6hl-redhat-linux-gnu-lib... no checking for armv6hl-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking build system type... armv6hl-redhat-linux-gnu checking host system type... armv6hl-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert armv6hl-redhat-linux-gnu file names to armv6hl-redhat-linux-gnu format... func_convert_file_noop checking how to convert armv6hl-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for armv6hl-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for armv6hl-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for armv6hl-redhat-linux-gnu-ar... ar checking for archiver @FILE support... @ checking for armv6hl-redhat-linux-gnu-strip... no checking for strip... strip checking for armv6hl-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for armv6hl-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for armv6hl-redhat-linux-gnu-g77... no checking for armv6hl-redhat-linux-gnu-xlf... no checking for armv6hl-redhat-linux-gnu-f77... no checking for armv6hl-redhat-linux-gnu-frt... no checking for armv6hl-redhat-linux-gnu-pgf77... no checking for armv6hl-redhat-linux-gnu-cf77... no checking for armv6hl-redhat-linux-gnu-fort77... no checking for armv6hl-redhat-linux-gnu-fl32... no checking for armv6hl-redhat-linux-gnu-af77... no checking for armv6hl-redhat-linux-gnu-xlf90... no checking for armv6hl-redhat-linux-gnu-f90... no checking for armv6hl-redhat-linux-gnu-pgf90... no checking for armv6hl-redhat-linux-gnu-pghpf... no checking for armv6hl-redhat-linux-gnu-epcf90... no checking for armv6hl-redhat-linux-gnu-gfortran... no checking for armv6hl-redhat-linux-gnu-g95... no checking for armv6hl-redhat-linux-gnu-xlf95... no checking for armv6hl-redhat-linux-gnu-f95... no checking for armv6hl-redhat-linux-gnu-fort... no checking for armv6hl-redhat-linux-gnu-ifort... no checking for armv6hl-redhat-linux-gnu-ifc... no checking for armv6hl-redhat-linux-gnu-efc... no checking for armv6hl-redhat-linux-gnu-pgfortran... no checking for armv6hl-redhat-linux-gnu-pgf95... no checking for armv6hl-redhat-linux-gnu-lf95... no checking for armv6hl-redhat-linux-gnu-ftn... no checking for armv6hl-redhat-linux-gnu-nagfor... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb2... yes checking mmdb2/mmdb_manager.h usability... yes checking mmdb2/mmdb_manager.h presence... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes + make -j8 make all-recursive make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911' Making all in clipper make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' Making all in core make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/core' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c clipper_stats.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c hkl_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c clipper_test.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c hkl_datatypes.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c spacegroup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c symop.cpp -fPIC -DPIC -o .libs/libclipper_core_la-symop.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c container.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c hkl_operators.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c container_hkl.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c map_interp.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c container_map.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c map_utils.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c xmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-core.la -rpath /usr/lib libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so") libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" ) make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/core' Making all in contrib make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/contrib' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o convolution_search.lo convolution_search.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o sfcalc.lo sfcalc.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o edcalc.lo edcalc.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o sfcalc_obs.lo sfcalc_obs.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o fffear.lo fffear.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o sfscale.lo sfscale.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o function_object_bases.lo function_object_bases.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o sfweight.lo sfweight.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o mapfilter.lo mapfilter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o skeleton.lo skeleton.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o originmatch.lo originmatch.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o test_contrib.lo test_contrib.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-contrib.la -rpath /usr/lib convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs ../core/.libs/libclipper-core.so -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/contrib' make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o cif/cif_data_io.lo cif/cif_data_io.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o minimol/minimol.lo minimol/minimol.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o minimol/container_minimol.lo minimol/container_minimol.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o minimol/minimol_data.lo minimol/minimol_data.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o minimol/minimol_io.lo minimol/minimol_io.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c minimol/minimol.cpp -fPIC -DPIC -o minimol/.libs/minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o phs/phs_io.lo phs/phs_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o cns/cns_map_io.lo cns/cns_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c -o fortran/f_interface.lo fortran/f_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mmdb/libclipper-mmdb.la -rpath /usr/lib mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs core/.libs/libclipper-core.so -lsrfftw -lsfftw -lpthread -lmmdb2 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o phs/libclipper-phs.la -rpath /usr/lib phs/phs_io.lo core/libclipper-core.la -lm libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cif/libclipper-cif.la -rpath /usr/lib cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs core/.libs/libclipper-core.so -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs core/.libs/libclipper-core.so -lsrfftw -lsfftw -lpthread -lmmdb2 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o fortran/libclipper-fortran.la -rpath /usr/lib fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/contrib/.libs -L/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so /builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o minimol/libclipper-minimol.la -rpath /usr/lib minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/mmdb/.libs -L/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so /builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -lpthread -lmmdb2 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cns/libclipper-cns.la -rpath /usr/lib cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs core/.libs/libclipper-core.so -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ccp4/libclipper-ccp4.la -rpath /usr/lib ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs core/.libs/libclipper-core.so -lsrfftw -lsfftw -lpthread -lccp4c -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' Making all in examples make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/examples' make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911' make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.HjiF8y + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm '!=' / ']' + rm -rf /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm ++ dirname /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm + cd clipper-2.1.20140911 + rm -rf /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm + make install DESTDIR=/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm 'INSTALL=install -p' 'CPPROG=cp -p' Making install in clipper make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' Making install in core make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/core' make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/core' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib' /bin/sh ../../libtool --mode=install install -p libclipper-core.la '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib' libtool: install: install -p .libs/libclipper-core.so.2.0.1 /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-core.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: install -p .libs/libclipper-core.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-core.la libtool: install: warning: remember to run `libtool --finish /usr/lib' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/core' install -p -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/core' install -p -m 644 test_data.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/core' make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/core' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/core' Making install in contrib make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/contrib' make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/contrib' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib' /bin/sh ../../libtool --mode=install install -p libclipper-contrib.la '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib' libtool: install: warning: relinking `libclipper-contrib.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20140911/clipper/contrib; /bin/sh /builddir/build/BUILD/clipper-2.1.20140911/libtool --tag CXX --mode=relink g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-contrib.la -rpath /usr/lib convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib -L/usr/lib -lclipper-core -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: install -p .libs/libclipper-contrib.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-contrib.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: install -p .libs/libclipper-contrib.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-contrib.la libtool: install: warning: remember to run `libtool --finish /usr/lib' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/contrib' install -p -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/contrib' make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/contrib' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper/contrib' make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib' /bin/sh ../libtool --mode=install install -p mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib' libtool: install: warning: relinking `mmdb/libclipper-mmdb.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20140911/clipper; /bin/sh /builddir/build/BUILD/clipper-2.1.20140911/libtool --tag CXX --mode=relink g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mmdb/libclipper-mmdb.la -rpath /usr/lib mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib -L/usr/lib -lclipper-core -lsrfftw -lsfftw -lpthread -lmmdb2 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: install -p mmdb/.libs/libclipper-mmdb.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-mmdb.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: install -p mmdb/.libs/libclipper-mmdb.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-mmdb.la libtool: install: warning: relinking `minimol/libclipper-minimol.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20140911/clipper; /bin/sh /builddir/build/BUILD/clipper-2.1.20140911/libtool --tag CXX --mode=relink g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o minimol/libclipper-minimol.la -rpath /usr/lib minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs -L/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib -L/usr/lib -lclipper-mmdb -lclipper-core -lsrfftw -lsfftw -lpthread -lmmdb2 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: install -p minimol/.libs/libclipper-minimol.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-minimol.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: install -p minimol/.libs/libclipper-minimol.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-minimol.la libtool: install: warning: relinking `phs/libclipper-phs.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20140911/clipper; /bin/sh /builddir/build/BUILD/clipper-2.1.20140911/libtool --tag CXX --mode=relink g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o phs/libclipper-phs.la -rpath /usr/lib phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o phs/.libs/phs_io.o -L/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib -L/usr/lib -lclipper-core -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: install -p phs/.libs/libclipper-phs.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-phs.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: install -p phs/.libs/libclipper-phs.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-phs.la libtool: install: warning: relinking `cif/libclipper-cif.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20140911/clipper; /bin/sh /builddir/build/BUILD/clipper-2.1.20140911/libtool --tag CXX --mode=relink g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cif/libclipper-cif.la -rpath /usr/lib cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o cif/.libs/cif_data_io.o -L/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib -L/usr/lib -lclipper-core -lsrfftw -lsfftw -lpthread -lmmdb2 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: install -p cif/.libs/libclipper-cif.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-cif.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: install -p cif/.libs/libclipper-cif.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-cif.la libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20140911/clipper; /bin/sh /builddir/build/BUILD/clipper-2.1.20140911/libtool --tag CXX --mode=relink g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ccp4/libclipper-ccp4.la -rpath /usr/lib ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm) libtool: install: warning: relinking `ccp4/libclipper-ccp4.la' libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib -L/usr/lib -lclipper-core -lsrfftw -lsfftw -lpthread -lccp4c -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: install -p ccp4/.libs/libclipper-ccp4.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-ccp4.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: install -p ccp4/.libs/libclipper-ccp4.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-ccp4.la libtool: install: warning: relinking `cns/libclipper-cns.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20140911/clipper; /bin/sh /builddir/build/BUILD/clipper-2.1.20140911/libtool --tag CXX --mode=relink g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cns/libclipper-cns.la -rpath /usr/lib cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib -L/usr/lib -lclipper-core -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: install -p cns/.libs/libclipper-cns.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-cns.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: install -p cns/.libs/libclipper-cns.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-cns.la libtool: install: warning: relinking `fortran/libclipper-fortran.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20140911/clipper; /bin/sh /builddir/build/BUILD/clipper-2.1.20140911/libtool --tag CXX --mode=relink g++ -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -version-info 2:1 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o fortran/libclipper-fortran.la -rpath /usr/lib fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crti.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtbeginS.o fortran/.libs/f_interface.o -L/builddir/build/BUILD/clipper-2.1.20140911/clipper/core/.libs -L/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib -L/usr/lib -lclipper-contrib -lclipper-core -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1 -L/usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/crtendS.o /usr/lib/gcc/armv6hl-redhat-linux-gnueabi/5.2.1/../../../crtn.o -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -march=armv6 -mfloat-abi=hard -mfpu=vfp -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: install -p fortran/.libs/libclipper-fortran.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-fortran.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: install -p fortran/.libs/libclipper-fortran.lai /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-fortran.la libtool: install: warning: remember to run `libtool --finish /usr/lib' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/ccp4' install -p -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/ccp4' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/cif' install -p -m 644 cif/cif_data_io.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/cif' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/cns' install -p -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/cns' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/minimol' install -p -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/minimol' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/mmdb' install -p -m 644 mmdb/clipper_mmdb.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/mmdb' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/phs' install -p -m 644 phs/phs_io.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper/phs' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper' install -p -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/include/clipper' make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/clipper' Making install in examples make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/examples' make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911/examples' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/examples' make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911/examples' make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911' make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20140911' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/pkgconfig' install -p -m 644 clipper.pc '/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/pkgconfig' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911' make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20140911' + rm -f /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-ccp4.la /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-cif.la /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-cns.la /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-contrib.la /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-core.la /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-fortran.la /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-minimol.la /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-mmdb.la /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-phs.la + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/clipper-2.1.20140911 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-minimol.so.2.0.1 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-cif.so.2.0.1 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-ccp4.so.2.0.1 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-mmdb.so.2.0.1 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-contrib.so.2.0.1 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-phs.so.2.0.1 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-fortran.so.2.0.1 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-cns.so.2.0.1 extracting debug info from /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/lib/libclipper-core.so.2.0.1 /usr/lib/rpm/sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. symlinked /usr/lib/debug/usr/lib/libclipper-mmdb.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-mmdb.so.2.debug symlinked /usr/lib/debug/usr/lib/libclipper-cif.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-cif.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-contrib.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-contrib.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-fortran.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-fortran.so.2.debug symlinked /usr/lib/debug/usr/lib/libclipper-contrib.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-contrib.so.2.debug symlinked /usr/lib/debug/usr/lib/libclipper-ccp4.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-ccp4.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-fortran.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-fortran.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-cns.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-cns.so.2.debug symlinked /usr/lib/debug/usr/lib/libclipper-cif.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-cif.so.2.debug symlinked /usr/lib/debug/usr/lib/libclipper-mmdb.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-mmdb.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-phs.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-phs.so.2.debug symlinked /usr/lib/debug/usr/lib/libclipper-phs.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-phs.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-ccp4.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-ccp4.so.2.debug symlinked /usr/lib/debug/usr/lib/libclipper-minimol.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-minimol.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-minimol.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-minimol.so.2.debug symlinked /usr/lib/debug/usr/lib/libclipper-core.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-core.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-cns.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-cns.so.debug symlinked /usr/lib/debug/usr/lib/libclipper-core.so.2.0.1.debug to /usr/lib/debug/usr/lib/libclipper-core.so.2.debug 3173 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: clipper-2.1-28.20140911bs02fc23.armv6hl Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.mrTybn + umask 022 + cd /builddir/build/BUILD + cd clipper-2.1.20140911 + DOCDIR=/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/share/doc/clipper + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/share/doc/clipper + cp -pr README /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/share/doc/clipper + cp -pr AUTHORS /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/share/doc/clipper + cp -pr COPYING /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/share/doc/clipper + exit 0 Provides: clipper = 2.1-28.20140911bs02fc23 clipper(armv6hl-32) = 2.1-28.20140911bs02fc23 libclipper-ccp4.so.2 libclipper-cif.so.2 libclipper-cns.so.2 libclipper-contrib.so.2 libclipper-core.so.2 libclipper-fortran.so.2 libclipper-minimol.so.2 libclipper-mmdb.so.2 libclipper-phs.so.2 Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: libc.so.6 libc.so.6(GLIBC_2.4) libccp4c.so.0 libclipper-contrib.so.2 libclipper-core.so.2 libclipper-mmdb.so.2 libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libgcc_s.so.1(GCC_4.0.0) libm.so.6 libm.so.6(GLIBC_2.4) libmmdb2.so.0 libpthread.so.0 libpthread.so.0(GLIBC_2.4) libsfftw.so.2 libsrfftw.so.2 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_ARM_1.3.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) rtld(GNU_HASH) Processing files: clipper-devel-2.1-28.20140911bs02fc23.armv6hl Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.iDI53r + umask 022 + cd /builddir/build/BUILD + cd clipper-2.1.20140911 + DOCDIR=/builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/share/doc/clipper-devel + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/share/doc/clipper-devel + cp -pr dox /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm/usr/share/doc/clipper-devel + exit 0 Provides: clipper-devel = 2.1-28.20140911bs02fc23 clipper-devel(armv6hl-32) = 2.1-28.20140911bs02fc23 pkgconfig(clipper) = 2.1.20140911 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libclipper-ccp4.so.2 libclipper-cif.so.2 libclipper-cns.so.2 libclipper-contrib.so.2 libclipper-core.so.2 libclipper-fortran.so.2 libclipper-minimol.so.2 libclipper-mmdb.so.2 libclipper-phs.so.2 pkgconfig(libccp4c) pkgconfig(mmdb2) Processing files: clipper-debuginfo-2.1-28.20140911bs02fc23.armv6hl Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm Wrote: /builddir/build/RPMS/clipper-2.1-28.20140911bs02fc23.armv6hl.rpm Wrote: /builddir/build/RPMS/clipper-devel-2.1-28.20140911bs02fc23.armv6hl.rpm Wrote: /builddir/build/RPMS/clipper-debuginfo-2.1-28.20140911bs02fc23.armv6hl.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ZAQSOC + umask 022 + cd /builddir/build/BUILD + cd clipper-2.1.20140911 + rm -rf /builddir/build/BUILDROOT/clipper-2.1-28.20140911bs02fc23.arm + exit 0 Child return code was: 0 LEAVE do -->