Mock Version: 1.2.14
ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/samtools.spec'], logger=<mockbuild.trace_decorator.getLog object at 0xb5e692f0>chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-26009/root'user='mockbuild'env={'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_UMASK': '002', 'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100'}printOutput=Falseuid=1000gid=135timeout=0shell=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv6hl --nodeps /builddir/build/SPECS/samtools.spec'] with env {'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_UMASK': '002', 'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100'} and shell False
Building target platforms: armv6hl
Building for target armv6hl
Wrote: /builddir/build/SRPMS/samtools-0.1.19-8bs02fc23.src.rpm
Child return code was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv6hl --nodeps  /builddir/build/SPECS/samtools.spec '], logger=<mockbuild.trace_decorator.getLog object at 0xb5e692f0>chrootPath='/var/lib/mock/fedora-23-armhfp-pidora-round2-root-26009/root'shell=Falseprivate_network=Trueenv={'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_UMASK': '002', 'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100'}printOutput=Falseuid=1000gid=135timeout=0user='mockbuild')
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv6hl --nodeps  /builddir/build/SPECS/samtools.spec '] with env {'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'CCACHE_UMASK': '002', 'CCACHE_DIR': '/tmp/ccache', 'TERM': 'vt100'} and shell False
Building target platforms: armv6hl
Building for target armv6hl
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.2cF2ao
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf samtools-0.1.19
+ /usr/bin/bzip2 -dc /builddir/build/SOURCES/samtools-0.1.19.tar.bz2
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd samtools-0.1.19
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (samtools-0.1.14-soname.patch):'
Patch #0 (samtools-0.1.14-soname.patch):
+ /usr/bin/patch -p1 -b --suffix .soname --fuzz=0
patching file Makefile
Hunk #1 succeeded at 84 (offset 6 lines).
Patch #1 (samtools-0.1.19-faidx_fetch_seq2.patch):
+ echo 'Patch #1 (samtools-0.1.19-faidx_fetch_seq2.patch):'
+ /usr/bin/patch -p1 -b --suffix .seq2 --fuzz=0
patching file faidx.c
Patch #2 (samtools-0.1.19-R-fixes.patch):
+ echo 'Patch #2 (samtools-0.1.19-R-fixes.patch):'
+ /usr/bin/patch -p1 -b --suffix .Rfixes --fuzz=0
patching file faidx.c
patching file faidx.h
+ perl -pi -e 's[/software/bin/python][/usr/bin/python]' misc/varfilter.py
+ sed -i 's/\r//' misc/export2sam.pl
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.MFJ1nV
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-0.1.19
+ make 'CFLAGS=-O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp' dylib -j8
make[1]: Entering directory '/builddir/build/BUILD/samtools-0.1.19'
rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip samtools *~ *.a *.so.* *.so *.dylib
make[1]: Leaving directory '/builddir/build/BUILD/samtools-0.1.19'
make[1]: Entering directory '/builddir/build/BUILD/samtools-0.1.19'
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -DBGZF_CACHE -I. bgzf.c -o bgzf.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kstring.c -o kstring.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_aux.c -o bam_aux.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam.c -o bam.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_import.c -o bam_import.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam.c -o sam.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_index.c -o bam_index.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_pileup.c -o bam_pileup.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_lpileup.c -o bam_lpileup.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_md.c -o bam_md.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razf.c -o razf.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. faidx.c -o faidx.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bedidx.c -o bedidx.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. knetfile.c -o knetfile.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_sort.c -o bam_sort.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_header.c -o sam_header.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_reheader.c -o bam_reheader.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kprobaln.c -o kprobaln.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_cat.c -o bam_cat.o
gcc -shared -Wl,-soname,libbam.so.1 -o libbam.so.1 bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o -lc -lz
make[1]: Leaving directory '/builddir/build/BUILD/samtools-0.1.19'
+ make 'CFLAGS=-O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC' samtools razip -j8
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview.c -o bam_tview.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_plcmd.c -o bam_plcmd.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_view.c -o sam_view.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdup.c -o bam_rmdup.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdupse.c -o bam_rmdupse.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_mate.c -o bam_mate.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_stat.c -o bam_stat.o
make[1]: Entering directory '/builddir/build/BUILD/samtools-0.1.19'
ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o
ar: `u' modifier ignored since `D' is the default (see `U')
make[1]: Leaving directory '/builddir/build/BUILD/samtools-0.1.19'
make[1]: Entering directory '/builddir/build/BUILD/samtools-0.1.19/bcftools'
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf.c -o bcf.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_color.c -o bam_color.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bamtk.c -o bamtk.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kaln.c -o kaln.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf.c -o bam2bcf.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf_indel.c -o bam2bcf_indel.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. errmod.c -o errmod.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sample.c -o sample.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. cut_target.c -o cut_target.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. phase.c -o phase.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2depth.c -o bam2depth.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. padding.c -o padding.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bedcov.c -o bedcov.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bamshuf.c -o bamshuf.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview_curses.c -o bam_tview_curses.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview_html.c -o bam_tview_html.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. vcf.c -o vcf.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razip.c -o razip.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcfutils.c -o bcfutils.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. prob1.c -o prob1.o
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o razip razip.o razf.o knetfile.o -lz
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. em.c -o em.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kfunc.c -o kfunc.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kmin.c -o kmin.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. index.c -o index.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. fet.c -o fet.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. mut.c -o mut.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf2qcall.c -o bcf2qcall.o
ar -csru libbcf.a bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o
ar: `u' modifier ignored since `D' is the default (see `U')
make[1]: Leaving directory '/builddir/build/BUILD/samtools-0.1.19/bcftools'
make[1]: Entering directory '/builddir/build/BUILD/samtools-0.1.19/misc'
make[1]: Nothing to be done for 'lib'.
make[1]: Leaving directory '/builddir/build/BUILD/samtools-0.1.19/misc'
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o bam_tview_curses.o bam_tview_html.o  libbam.a -Lbcftools -lbcf  -lcurses  -lm -lz -lpthread
+ cd misc/
+ make 'CFLAGS=-O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC' -j8
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -DMD5SUM_MAIN -o md5sum-lite.o md5.c
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -I.. md5.c -o md5.o
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -c -I.. -o md5fa.o md5fa.c
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o maq2sam-short maq2sam.c -lz
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -DMAQ_LONGREADS -o maq2sam-long maq2sam.c -lz
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -c -I.. -o ace2sam.o ace2sam.c
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -c -I.. -o wgsim.o wgsim.c
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -c -I.. -o bamcheck.o bamcheck.c
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o md5sum-lite md5sum-lite.o
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o md5fa md5.o md5fa.o -lz
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o wgsim wgsim.o -lm -lz
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o ace2sam ace2sam.o -lz
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o bamcheck bamcheck.o -L.. -lm -lbam -lpthread -lz
+ cd ../bcftools
+ make 'CFLAGS=-O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC' -j8
make[1]: Entering directory '/builddir/build/BUILD/samtools-0.1.19/bcftools'
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -I..  call1.c -o call1.o
gcc -c -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -I..  main.c -o main.o
gcc -O2 -g -march=armv6 -mfloat-abi=hard -mfpu=vfp -fPIC -o bcftools call1.o main.o ../kstring.o ../bgzf.o ../knetfile.o ../bedidx.o -L.  -lbcf -lm -lz -lpthread
make[1]: Leaving directory '/builddir/build/BUILD/samtools-0.1.19/bcftools'
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.QV98Ww
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm
++ dirname /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm
+ cd samtools-0.1.19
+ rm -rf /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm
+ mkdir -p /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin
+ install -p samtools razip /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin
+ mkdir -p /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/include/samtools
+ install -p -m 644 bam.h bam2bcf.h bam_endian.h bam_tview.h bgzf.h errmod.h faidx.h kaln.h khash.h klist.h knetfile.h kprobaln.h kseq.h ksort.h kstring.h razf.h sam.h sam_header.h sample.h /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/include/samtools
+ mkdir -p /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/lib
+ strip libbam.so.1
+ install -p -m 755 libbam.so.1 /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/lib
+ ln -sf libbam.so.1 /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/lib/libbam.so
+ mkdir -p /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/man/man1/
+ cp -p samtools.1 /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/man/man1/
+ cd misc/
+ install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl psl2sam.pl sam2vcf.pl samtools.pl soap2sam.pl varfilter.py wgsim wgsim_eval.pl zoom2sam.pl /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin
+ cd ../bcftools/
+ install -p bcftools vcfutils.pl /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin
+ mv README README.bcftools
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/samtools-0.1.19
extracting debug info from /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin/maq2sam-short
extracting debug info from /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin/md5sum-lite
extracting debug info from /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin/samtools
extracting debug info from /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin/md5fa
extracting debug info from /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin/bcftools
extracting debug info from /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin/razip
extracting debug info from /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin/wgsim
extracting debug info from /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/bin/maq2sam-long
/usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
1407 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Processing files: samtools-0.1.19-8bs02fc23.armv6hl
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xV9Ghd
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-0.1.19
+ DOCDIR=/builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ cp -pr AUTHORS /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ cp -pr ChangeLog.old /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ cp -pr COPYING /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ cp -pr INSTALL /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ cp -pr NEWS /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ cp -pr examples/ /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ cp -pr bcftools/README.bcftools /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ cp -pr bcftools/bcf.tex /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm/usr/share/doc/samtools
+ exit 0
Provides: samtools = 0.1.19-8bs02fc23 samtools(armv6hl-32) = 0.1.19-8bs02fc23
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/env /usr/bin/perl /usr/bin/python libc.so.6 libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libm.so.6 libm.so.6(GLIBC_2.4) libncurses.so.5 libpthread.so.0 libpthread.so.0(GLIBC_2.4) libtinfo.so.5 libz.so.1 libz.so.1(ZLIB_1.2.0) libz.so.1(ZLIB_1.2.2) libz.so.1(ZLIB_1.2.3.3) perl(Carp) perl(Data::Dumper) perl(File::Spec) perl(Getopt::Long) perl(Getopt::Std) perl(List::Util) perl(constant) perl(strict) perl(warnings) rtld(GNU_HASH)
Processing files: samtools-devel-0.1.19-8bs02fc23.armv6hl
Provides: samtools-devel = 0.1.19-8bs02fc23 samtools-devel(armv6hl-32) = 0.1.19-8bs02fc23
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbam.so.1
Processing files: samtools-libs-0.1.19-8bs02fc23.armv6hl
Provides: libbam.so.1 samtools-libs = 0.1.19-8bs02fc23 samtools-libs(armv6hl-32) = 0.1.19-8bs02fc23
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: libc.so.6 libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libz.so.1 libz.so.1(ZLIB_1.2.0) libz.so.1(ZLIB_1.2.2) libz.so.1(ZLIB_1.2.3.3) rtld(GNU_HASH)
Processing files: samtools-debuginfo-0.1.19-8bs02fc23.armv6hl
Provides: samtools-debuginfo = 0.1.19-8bs02fc23 samtools-debuginfo(armv6hl-32) = 0.1.19-8bs02fc23
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm
Wrote: /builddir/build/RPMS/samtools-0.1.19-8bs02fc23.armv6hl.rpm
Wrote: /builddir/build/RPMS/samtools-devel-0.1.19-8bs02fc23.armv6hl.rpm
Wrote: /builddir/build/RPMS/samtools-libs-0.1.19-8bs02fc23.armv6hl.rpm
Wrote: /builddir/build/RPMS/samtools-debuginfo-0.1.19-8bs02fc23.armv6hl.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.qfwNrj
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-0.1.19
+ rm -rf /builddir/build/BUILDROOT/samtools-0.1.19-8bs02fc23.arm
+ exit 0
Child return code was: 0
LEAVE do -->